For the longest time my 2007 Honda FourTrax Rancher 420 TRX420FM would backfire and shut off when. Turns out it was the fuel filter. After replacing the filter when i turned the key on the 2 red lights would flicker. When i tried to start it the battery was low so i charged it overnight. This morning i went out and turned the key on the 2 red light still flickered and the clicking noise was still there. When i pushed the started button it would turn over and the lights would would stay red. After letting off the starter button the red lights would flicker and the clicking noise came back. I took the battery out and hooked it up outside the battery box. I turned on the key and the same thing happened. The clicking noise was somewhere behind where the battery box is. I moved a couple of wires to get a better view of where the noise was coming from. When i did the 2 red lights went out and the clicking noise stopped however the engine turn over. i used a screwdriver to jump the cyclonoid and the engine would turn over. Im pretty something else is wrong and not the cyclonoid. I ordered one just in case. Any other ideas on what might be wrong?

Thanks